With the table capable to cut across the width of the material (48 inches), a program was created to act as the final cut to remove the completely cut material from the main sheet.

G21 G54
G90X-665Y10
G0Z1.0
G38.2Z-300F1000
G92Z-18
G90G0Z1
M3S10000
G4P1.2
G1Z1.0F1000.0
G1Y-1210.0F2500.0
M05
G0Z10.0
M30

This code was ran after homing the machine ($H) and resetting G54 location5 mm from the edge of the homing resting location. It made a clean cut, except the beginning.

I had forgotten about the delay to fire and will have to implement a primary cut that is near the cut line, but not on it.